Creat­ing the Future
Doctoral projects

Triggered contrac­tion of self-assem­bled DNA nanotube rings

Maja Illig - Hector RCD Awardee Kerstin Göpfrich

DNA nanotubes are widely used as a mimic for cytoskeletal filaments in bottom-up synthetic biology. Using a synthetic starPEG construct that acts as a crosslinker, we succeed in bundling the few nanometer thick DNA nanotubes. In bulk they self-assemble into micron-scale rings. We achieve their contraction upon temperature increase or molecular depletion with crowing molecules such as dextran (in collaboration with Kierfeld group, TU Dortmund).

Triggered contraction of self-assembled DNA nanotube rings© Maja Illig

Cloudy With a Chance of Rain: Simulat­ing the Galac­tic Weather

Katrin Lehle - Hector RCD Awardee Dylan Nelson

Galaxies are embedded in a rich and complex atmosphere – the circumgalactic medium (CGM). Understanding the processes going on in the CGM is inevitable for a self-consistent model for galaxy evolution. Thus, we will shed some light on open questions about galaxy clusters using numerical simulations. We will analyze the already existing cosmological state-of-the art simulation IllustrisTNG and also write new types of simulation.

Wolkig mit Aussicht auf Regen: Simulationen des galaktischen Wetters© Katrin Lehle

Genetic basis of bilat­eral asymme­try in a scale-eating fish

Xiaomeng Tian – Hector Fellow Axel Meyer

Most animals exhibit bilateral symmetry, but asymmetric traits have repeatedly evolved in different taxonomic groups. However, the genetic mechanisms responsible for asymmetric trait variation remain unclear. We will use the scale-eating fish, Perissodus microlepis, to dissect the genetic basis of its remarkable morphological and behavioural asymmetry. This study will yield important insights into the mechanistic underpinnings of asymmetric development and the origin of evolutionary novelty.

© Xiaomeng Tian

Neural processes of adaptive and maladap­tive memory consolidation

Tobias Debor – Hector RCD Awardee Monika Schönauer

Highly emotional memories are processed differently from neutral ones. For negative experiences, this can result in maladaptive memory formation which may foster emotional psychological disorders. This project aims to improve our understanding of adaptive and maladaptive memory processing. We will analyze brain activity in tasks that model maladaptive memory symptoms. By this, we hope to identify entry points for treatments that counteract maladaptive memory formation.

© Tobias Debor

High-resolu­tion 3D mapping of the human hypothal­a­mus in 10 postmortem brains

Alexey Chervonnyy – Hector Fellow Katrin Amunts

Our study aims to analyse and map the cytoarchitecture of the human hypothalamus in histological sections of 10 postmortem brains. As a result, we want to develop a high-resolution 3D reconstructed histological model of the hypothalamus and its nuclei as a tool for assessing the structure-function relationship and a probabilistic cytoarchitectonic map of the hypothalamus that will reflect the variability of hypothalamic nuclei between individual brains, in terms of size and location in standard reference space.

Hochaufgelöste 3D-Kartierung des menschlichen Hypothalamus in 10 postmortalen Gehirnen© Alexey Chervonnyy

Systems biology approach for eluci­dat­ing bacte­r­ial revival after antibi­otic treatment

Adewale Ogunleye – Hector RCD Awardee Ana Rita Brochado

The ability of non-resistant bacterial pathogens to survive antibiotics during infection (tolerance) contributes not only to global rise of antibiotic resistance, but also to chronical relapse of infections. The aim of the project is to understand what contributes to bacterial revival after antibiotic treatment and the underlying biological pathways. The findings of this project will contribute to better informed decisions on the selection of antibiotics to treat infections and prevent relapse.

© Adewale Ogunleye

Strate­gies to escape viral infec­tion in archaea

Zaloa Aguirre – Hector RCD Awardee Tessa Quax

Viruses are the most abundant biological entities on Earth. Although they infect members of the three domains of life, little is known about the infection mechanisms of archaeal viruses. The aim of this research is to gain insight into the interaction between halophilic archaeal cells and their viruses by using a combination of light and electron microscopy with molecular biology and virological techniques.

© Hector Fellow Academy

Mechan­i­cal manip­u­la­tion of molec­u­lar spins in CNT resonators

Tim Althuon – Hector Fellow Wolfgang Wernsdorfer

Carbon nanotube (CNT) resonators will be designed and fabricated to exploit their sensing properties. We will graft a single-molecule magnet (SMM) on such a CNT resonator in order to manipulate its spin states via the mechanical motion of the CNT. Using this nanomechanical approach, single-molecule magnets will be investigated with the long-term prospect of applying them in future quantum technologies.

© Tim Althuon

Security and Anonymity in Quantum Networks

Ziad Chaoui – Hector RCD Awardee Anna Pappa

Due to technological advances we can now build devices that actively manipulate quantum mechanical objects, and using quantum objects as information carriers has many important implications for future communication. Quantum information can be used to achieve perfect security and provide efficiency for communication networks. This research project focuses on designing secure and anonymous quantum communication protocols in an effort to build a future quantum internet.

© Ziad Chaoui

Machine learn­ing methods for gravi­ta­tional-wave data analysis

Maximilian Dax – Hector Fellow Bernhard Schölkopf

The detection of gravitational waves (GWs) has opened a new window on the universe, through which we can study the physics of black-hole and neutron-star mergers. By analyzing GWs we can infer properties of the corresponding astrophysical systems. Current analysis methods are however too computationally expensive to deal with the growing amount of data. My research is thus concerned with the development of more efficient methods for the GW analysis using powerful machine learning methods.

© Stephen R. Green